Speaking in guise of a seaman "Captain," who is instructing a court "Admiral" in his duties, Boteler says:

In the first place therfore, when the Generall entends upon such a daye to make out to Sea with his whole Fleete; a fitt Signall to expresse as much to every perticuler shypp may be, by causeinge his Topp-sayles to lie loose upon the Capps, very early that morneinge; and if itt prove to be hazie and darcke weather, soe that the fleete being great, or lieing scattered att an Anchor, may not well perceive it, Hee may then, about two or three houres before he begin to waye his Anchors cause fire to be given to a single Piece of Ordinance.

British Flags — Part 168

Secondly, if a fleete being att sea, and occasions require a generall convention of the Captaines and Masters aborde the Admiralls shypp: A fitt signall to lett them know itt may be, to hang out a yellow flagge in the uppermost part of the Admiralls Maine Shrowdes: But if ther be entended only the comeinge aborde of the Counsell of Warre, then may ther be a blewe flagge hung out in the same place; for I conceive that this part is more proper then is the Missen Shrowdes, (though that be the most received place for this purpose) in regard that itt is more perceptable and may better be discovered.

British Flags — Part 168

Thirdly, if the Generall shall finde cause, to cast about in the night (for if by daye, this asketh noe signall) besides the Light or Lanthorne, which every Admirall is to carry in the Poope, the most evidenceinge signe that I can thincke of may be, to put another light in the Maine-topp: And if Hee entend to lie a-Hull, to shewe two lights in the same place: If a-Trie, three lights, the which lights are soe to be carried untill itt be founde that the whole Fleete hathe taken notice of itt, and answere itt accordingly.

British Flags — Part 168

Fourthly, If any Squadron or parte of the fleete, by beinge too forwards a-heade, shall be required to shorten sayle, and to attend the comeinge up of the Admirall; a Signe appropriated may be, to heave or wave an Ensigne abroade in the Admiralls Fore-topp, and to give fire to a great piece withall; And on the contrary, whensoever any of them keepe too farre a-sterne, to wave out the same flagge in the Missen-topp.

Fifthly, If upon the discoverye of any straunge fleete or Shyp, the Generall find itt fitt to have any of the Pinnaces, and best saylers of his fleete, to stand in with them, and to require them to come to speake with him; an apte signe may be to give fire to a piece of Ordinance or two out of his own chase, and withall to shewe a flagge in his Bolt sprites Topp.