The anchor flag was not used during the Commonwealth, but it was restored in 1661, when the contractor was paid £2. 10_s._ "ffor shading the Standard and Ensigne and Jack with a ancor," £5. 10_s._ "ffor sowing silke and cloth for the sockett and markeing the Ensigne with the ancor and cable," and £4. 10_s._ "ffor sowing silke and cloth for socketing & markeing the flag with a ancor and cable[246]."
The subordinate "badge" flag was now promoted to the dignity of a "standard" and flown at the masthead as a substitute for the royal standard when the Lord Admiral was unable to fly the latter, because of the presence of the king in the fleet.
In 1673 the Test Act deprived the Duke of York of his office, which for the next eleven years was placed in commission. Charles II, just before his death, revoked the commission, and the office fell in to the crown. When the Duke of York succeeded to the throne in 1685 as James II, he retained the office in his own hands, and in token of this placed "a crown over the anchor as being himself his own Admiral[247]."
In addition to the anchor flag (which when used by the sovereign is flown at the fore, as the main is already occupied by the royal standard) a flag of similar design, but with the St George's cross in the upper canton, was also flown as an ensign at the stern[248]
At this period, according to Lieut. Graydon's flag-book, the Scots Lord Admiral flew a white flag containing a blue anchor and cable. The Admiral of Scotland, who according to Pepys[249] was "no officer of State" and had "no precedence at all given him from his office," was abolished after the Union of 1707, when the three small ships representing the navy of that country were absorbed in the English, henceforth the British, fleet.
After the Revolution of 1688 the Office of Lord High Admiral was placed in commission, but it was revived by William III in June, 1702, when the Earl of Pembroke was appointed. Pembroke had intended to proceed to sea in command of the fleet then being fitted out in anticipation of the outbreak of the war with France and Spain, known as the War of the Spanish Succession, and he would have flown the royal standard in his flagship. William, however, died on 8th March, and Queen Anne, immediately after her accession, deprived the Lord High Admiral of the right to fly the standard, among other perquisites and _droits_. Pembroke then gave instructions for the anchor flag to be supplied instead. But as he was not a seaman his proposal to take command of the fleet had naturally aroused much opposition, and in the end it was dropped. In May he was replaced as Lord High Admiral by Prince George of Denmark, the Queen's consort, and although Pembroke again held the office for a short time after the Prince's death in 1708, no opportunity arose for the anchor flag to be flown at sea in military command during his or the Prince's tenure.