One complaint of the students deserves special mention. They alleged that martial law interfered with the regular tribunals, and being pressed for particulars they stated positively 'that Sir Ralph Bagenal, being lieutenant of the army, was for killing of a soldier arraigned at the King's Bench, who pleaded his pardon. Whether justice hath been done by the Marshal of soldiers complained on to that we say that the man before mentioned to have been arraigned at the King's Bench, and attempted to be taken thence by the Marshal, but upon resistance of the judges stayed and committed to gaol, was after by the Marshal taken from thence, and had none other punishment than put on the pillory, muffled, as it should seem, lest he might be known, which we count rather a mockery than execution of justice.' No answer in effect was given to this heavy charge, but that the Marshal had authority over the military, and that the Governor had orders to maintain him. If the lawyers in Dublin were guilty of factious opposition to the Government, they were not altogether without excuse.[51]
Encouraged probably by the success of Shane O'Neill, Desmond behaved in London very much as he had behaved at Waterford. Being charged before the Council with openly defying the law in Ireland, he answered contumaciously, and when called to order refused to apologise. He was accordingly committed to the custody of the Lord Treasurer, on hearing which Fitzwilliam expressed an opinion that Desmond lacked both education and wit, and that the effect of bringing him to such senses as he had would be most beneficial in Ireland. 'The news,' he said, 'made some not only to change colour, but greatly sigh, whose nature God amend, make them banish flattery, malice, and other misdeeds.'
The Queen wrote to Lady Desmond to complain of the Earl's inordinate conduct, and to state her conviction that a little gentle imprisonment would do him good. Unheard-of favour had been ill requited; nevertheless, the royal patience was inexhaustible. No harm was intended to Desmond, and his wife was charged to keep order until his return. Between her son and her husband, the position of the countess was not pleasant. Fitzwilliam thought she did her best to hold the balance, and keep the peace between them; but her husband's friends accused her of unduly favouring Ormonde, an imputation which she indignantly denied. 'I always,' she declared with a certain pathos, 'wished them to be perfect friends, as two whom I love as myself.'[52]