Soviet deportations from Estonia were a series of mass deportations in 1941 and 1945–1951 carried out by the Stalinist regime of the former USSR from then Soviet-occupied Estonia. The two largest waves of deportations occurred in June 1941 and March 1949 simultaneously in all three occupied Baltic countries: Estonia, Latvia, and Lithuania. The deportations targeted primarily women, children and the elderly, calling them 'anti-Soviet elements'. In addition, there were Soviet deportations from Estonia based on the victims' ethnicity (Germans in 1945 and Ingrian Finns in 1947–1950) and religion (Jehovah's Witnesses in 1951). Ethnic Estonians who had been residing in Soviet Russia (mostly in the Leningrad Oblast) had already been subjected to deportation since 1935.

People were deported to remote areas of the Soviet Union, predominantly to Siberia and northern Kazakhstan, by means of railroad cattle cars. Entire families, including children and the elderly, were deported without trial or prior announcement. Of March 1949 deportees, over 70% of people were women and children under the age of 16.

Soviet deportations from Estonia

About 7,550 families, or 20,600 to 20,700 people, were deported from Estonia.

Soviet deportations from Estonia

The Estonian Internal Security Service has brought to justice several organizers of these events. The deportations have been repeatedly declared to constitute a crime against humanity by the Parliament of Estonia and acknowledged as such by the European Court of Human Rights.

Soviet deportations from Estonia

June deportation of 1941

In Estonia, as well as in other territories annexed by the Soviet Union in 1939–40, the first large-scale deportation of ordinary citizens was carried out by the local operational headquarters of the NKGB of the Estonian SSR under Boris Kumm (chairman), Andres Murro, Aleksei Shkurin, Veniamin Gulst, and Rudolf James, according to the top secret joint decree No 1299-526ss Directive on the Deportation of the Socially Alien Element from the Baltic Republics, Western Ukraine, Western Belarus and Moldavia by the Central Committee of the All-Union Communist Party (bolsheviks) and the Council of People's Commissars of the Soviet Union of 14 May 1941. The deportation procedure was established by the Serov Instructions.

The first repressions in Estonia affected Estonia's national elite. On 17 July 1940, Commander in Chief of the Armed Forces Johan Laidoner (died 1953, Vladimir prison) and his family, and on 30 July 1940, President Konstantin Päts (died 1956, Kalinin Oblast) and his family were deported to Penza and Ufa, respectively. In 1941 they were arrested. The country's political and military leadership was deported almost entirely, including 10 of 11 ministers and 68 of 120 members of parliament.

On 14 June 1941, and the following two days, 9,254 to 10,861 people, mostly urban residents, of them over 5,000 women and over 2,500 children under 16, 439 Jews (more than 10% of the Estonian Jewish population) were deported, mostly to Kirov Oblast, Novosibirsk Oblast or to prisons.

Only 4,331 persons returned to Estonia. 11,102 people were to be deported from Estonia according to the order of 13 June but some managed to escape. Identical deportations were carried out in Latvia and Lithuania at the same time. A few weeks later, approximately 1,000 people were arrested on Saaremaa for deportation, but this was interrupted as Nazi Germany launched a large-scale invasion of the Soviet Union and a considerable number of the prisoners were freed by the advancing German forces.

The first wave of deportation has always been well documented, as many witnesses were subsequently able to flee abroad during the Second World War. Deportations after 1944 were, however, much harder to document.

In July 1941 Estonia was conquered by Nazi Germany, who were forced out by the Soviet troops in 1944. As soon as the Soviets had returned the deportations resumed. In August 1945, 407 persons, most of them of German descent, were transferred from Estonia to Perm Oblast. 18 families (51 persons) were transferred to Tyumen Oblast in October (51 persons), 37 families (87 persons) in November and other 37 families (91 persons) in December 1945 as "traitors".

March deportation of 1949

During the collectivization period in the Baltic republics, on 29 January 1949, the Council of Ministers issued top secret decree No. 390–138ss, which obligated the Ministry for State Security (MGB) to exile the kulaks and the people's enemies from the three Baltic Republics forever.